Optimum Performance

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Dr. Tsvi Tlusty.Efficiency in the bacterial genome

















To increase profits, one should lower costs, raise prices and increase efficiency. Simple enough advice; but ask any business manager to what extent the cost of employee bonuses is offset by greater efficiency. Chances are the answer will be anything but simple.

The bacterium Escherichia coli, one of the best-studied single-cell organisms around, has its own formula for industrial efficiency – one that serves it well. This bacterium can be thought of as a factory with just one product: itself. It exists to make copies of itself, and its business plan is to make them at the lowest possible cost with the greatest possible efficiency. Efficiency, in the case of a bacterium, can be judged by the energy and resources it uses to maintain its plant and produce new cells, versus the time it expends on these tasks.

Dr. Tsvi Tlusty and research student Arbel Tadmor of the Physics of Complex Systems Department developed a mathematical model for evaluating the efficiency of these microscopic production plants. Their model, which recently appeared in the online journal PLoS Computational Biology, uses only five remarkably simple equations to check the efficiency of these complex factory systems.

The equations look at two components of the protein production process: ribosomes – the machinery by which proteins are produced – and RNA polymerase – the enzyme that copies the genetic information for protein production onto strands of messenger RNA for further translation into proteins. RNA polymerase is thus a sort of work "supervisor" that keeps protein production running smoothly by checking the specs and setting the pace. The first equation assesses the production rate of the ribosomes themselves; the second, the protein output of the ribosomes; the third, the production of RNA polymerase. The last two equations deal with how the cell assigns the available ribosomes and polymerases to the various tasks of creating other proteins, more ribosomes or more polymerases.

The theoretical model was tested in real bacteria. Do bacteria "weigh" the costs of constructing and maintaining their protein production machinery against the gains to be had from being able to produce more proteins in less time? What happens when a critical piece of equipment – say a main ribosome protein – is in short supply? When experimentally induced changes to genes having important cellular functions caused disruptions in the work flow, Tlusty and Tadmor found that their model was able to accurately predict how an E. coli would change its production strategy to maximize efficiency.

Bacteria are models of efficiency

What's the optimum? The model predicts that a bacterium, for instance, should have seven genes for ribosome production. It turns out that's exactly the number an average E. coli cell has. Bacteria having five or nine receive a much lower efficiency rating. Evolution, in other words, is a master efficiency expert for living factories, meeting any challenges that arise as production conditions change.   


Dr. Tzvi Tlusty's research is supported by the Clore Center for Biological Physics.