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Reeducating Renegade p53

Mutated proteins that abet cancer growth can be turned against the cancer
15.08.2016

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The protein known as p53 holds the life of the cell in its hand: With the activity of many genes at its command, it can direct DNA repair, or it can order the cell to commit suicide. This protein, one of a handful of so-called “tumor suppressors,” has been dubbed “guardian of the genome.” So it is perhaps unsurprising that p53 is mutated in around half of all cancers, among them some of the most aggressive. The mutated version of p53 is not merely ineffective as a tumor suppressor; it often aids and abets cancer growth.

Profs. Varda Rotter and Moshe Oren and Dr. Perry Tal, then a joint postdoctoral reasearcher in both labs in the Weizmann Institute of Science’s Molecular Cell Biology Department, now propose that these mutated “criminal elements” among the p53 crowd are not hopeless cases. They just require some “reeducation.”

Profs. Varda Rotter and Moshe Oren found a peptide that can turn the cancer tide

Rotter and Oren were among the first to discover the role of p53 in cancer, over 35 years ago. Since its discovery, tens of thousands of papers have been published on the subject of this one protein. Many researchers have also tried to envision a treatment that would reinstate the protein’s tumor-suppressive functions in tumor cells that have accrued mutant p53. But the obstacles have so far been daunting. Most targeted drugs work by blocking or inhibiting a particular protein; restoring a dysfunctional protein to a functional, nonmutated state is a much more complex undertaking.

For the past five years, Rotter’s and Oren’s labs have been collaborating on the idea that even p53 that is irreversibly mutated might be reformed – taught to act like the normal protein. Their approach was to look through libraries of small protein fragments called peptides, which are easily able to enter the cell and bind to p53, and identify those that might teach the protein to return to something like its original function.

In the first step, a search for peptides that simply bind to p53, the team used a method called “phage display,” which enabled them to test millions of prospective peptides. The team developed a unique screening protocol, employing several different approaches in sequence to “fish out” the peptides that are capable of doing the job. Indeed, they found that many of the peptides they tested can bind to mutant p53 and convert it to a state that resembles the normal protein.

The team then turned first to the facilities of the Nancy and Steven Grand Israel National Center for Personalized Medicine to conduct so-called “deep sequencing” on the more promising peptides, and then to Prof. Shmuel Pietrokovski of the Molecular Genetics Department, for bioinformatics analysis. Pietrokovski helped the team identify common structural elements within the peptides – called consensus motifs – that were the most effective in binding to the mutant p53 in such a way as to adjust its form to one that resembles the healthy protein.

p53, the guardian of the genome, acts on the DNA. Image: Protopedia

Next, several peptides carrying these motifs were synthesized and introduced to cancer cells grown in the lab. The team ultimately focused on one that seemed to be particularly effective against cells derived from a number of different types of cancers. Moving from the lab dish to mice, the team used a method in which tumors – of human origin – can be detected within the animal’s body by a special live imaging method. After administering the peptide, tumors of breast and ovarian cancer origin shrank and sometimes completely disappeared, with no apparent adverse effects in the mice.

“As cancer evolves, the cells produce more and more of the mutant p53, and it accumulates in these cells,” says Oren. “That could turn out to be its Achilles’ heel. Because once it is reeducated, those large amounts will act quickly to initiate the cell suicide program.” “It is as though we can turn these proteins from foe to friend all at once,” adds Rotter. “We can’t undo the mutation itself, but we can work around it by adding these therapeutic peptides to the protein structure.”

At present, the team is working with Yeda Research and Development Co., Ltd., the technology transfer arm of the Weizmann Institute of Science, and Dr. David Aviezer, a graduate of the Weizmann Institute, to move this discovery in the direction of medical application. “A drug to restore p53 function would be used together with other chemotherapy drugs,” says Oren. “The question is, which ones and for which cancers?” Rotter adds: “In cancers such as ovarian cancer, the p53 gene may be 100% mutated. And the prognosis for this cancer is still very poor. So we hope that a drug that ‘reeducates’ mutant p53 would have a profound effect on the outcome for these patients.”

Prof. Moshe Oren's research is supported by the Moross Integrated Cancer Center; the Pearl Welinsky Merlo Foundation Scientific Progress Research Fund; and the Dr. Miriam and Sheldon G. Adelson Medical Research Foundation. Prof. Oren is the incumbent of the Andre Lwoff Professorial Chair in Molecular Biology. 

Prof Varda Rotter's research is supported by Philip Garoon, Chicago, IL; and the Leir Charitable Foundation. Prof. Rotter is the incumbent of the Norman and Helen Asher Professorial Chair of Cancer Research. 

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