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Science Feature Articles</p>

The First Genetic Word

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Prof. Edward Trifonov. On the trail of the genetic code

Prof. Edward Trifonov is a detective -- but you won't find him at the scene of any crime. Trifonov, a member of the Weizmann Institute's Structural Biology Department, is a molecular geneticist and in his latest "case" he appears to have discovered the very first genetic sequence -- the first "word" in the genetic code of all living matter.
 
"We are all full of sequences," says Trifonov. "Life itself began as sequences. The original idea was that if some features of those ancient sequences remain in our genes today, perhaps we could track them down."
 
To reconstruct this molecular evolution, Trifonov turned not to the laboratory but to advanced mathematical and statistical analysis. He and a German colleague, Dr. Thomas Bettecken, first studied the nucleotide triplets that make up the genetic code in DNA and RNA. Could they find out which were the most ancient of the nucleotide triplets in our past? They soon realized that the occurrence of triplets led by the letter G (each nucleotide is signified by a letter) was frequent both in older patterns and in the patterns of modern genes. "You'd expect that in natural sequences a quarter of the cases would begin with G, while actually a third of all triplets start with G. This was a very strong lead to their original state," Trifonov explains.
 
Continuing to analyze the data, the team came to the conclusion that the triplet GCT is the most common and also the most expandable triplet. Therefore, it is the most likely candidate to be the earliest. "We realized that as soon as you give the triplet a chance to copy itself, it not only makes copies but makes them longer. GCT races to expand itself," Trifonov explains.
 
The researchers understood right away, however, that you could not produce a protein with just one repeating triplet. "That would be too monotonous: It wouldn't lead to life." But what if the triplet started to mutate? "Altogether, this would lead to ten triplets," says Trifonov. "And then we made a bold speculation that these ten triplets were the first coding triplets ever formed."
 
Trifonov and Bettecken then followed their next lead, this time aiming to unearth the list of the most ancient primordial amino acids, the building blocks of life. The team's first list of candidates had to meet the criterion of being amino acids that have a simple chemical structure. Then, recruiting one more criterion, Trifonov and Bettecken were able to reconstruct a list of the seven presumably earliest amino acids. All of them turned out to be encoded by the triplets derived from the starting GCT. In addition, the amino acid that corresponds to this generic triplet was also on the list.
 
The next step involved applying several more amino acid criteria. In this step, Trifonov estimated the chronological order in which the amino acids had appeared on life's stage, by averaging the orders suggested by the criteria.
 
Trifonov studied electrical engineering at Moscow Physical Technical Institute. In 1976, Trifonov and his family emigrated to Israel after only one year as refuseniks, this despite the fact that he had worked at the Moscow Atomic Energy Institute (albeit in a nonsecret biological division). "The Israeli Security Service thought at first that I was a spy," Trifonov recalls with a smile. And, although somewhat shy about the coverage his research has garnered, this Sherlock Holmes has finally caught his elusive evolutionary "culprit."

 

Life Sciences
English

The Pearling Effect

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From left to right: Prof. Samuel Safran, Dr. Alexander Bershadsky and Prof. Elisha Moses

A highlighted sentence in a book on the desk of Prof. Elisha Moses reads: "When the real world is recalcitrant, we build ourselves toy models in which the equations are simple enough for us to solve." Accordingly, Moses built a simplified model of a cell -- similar to a soap bubble but one-thousandth of a millimeter in size. Using this model, he has found out that cells can be tickled to "tears."
 
Moses, of the Physics of Complex Systems Department, agitates artificial cell membranes with laser tweezers (used for "grabbing" microscopic targets and moving them around). Along with Ph.D. student Roy Bar-Ziv, he found that pulling on membranes causes them to break into droplets reminiscent of a trail of tears or a string of pearls. Since cell shape is related to function, this finding is of great interest to biologists. So Dr. Alexander Bershadsky of the Molecular Cell Biology Department joined the research effort. Their aim: to find out if the "pearling" effect was present in live cell membranes as well.
 
And sure enough, Bershadsky was able to induce this effect in live cells through the use of a drug that virtually knocks out the structure inside the cell just below the membrane, called the cytoskeleton. Proof that the pearling effect also exists in live cells has lent additional weight to the research. Since weakening of the rigidity of the cytoskeleton is a characteristic of cancer cells, knowing the effect of this trait on membrane shape -- and how drugs control membrane shape -- may provide new clues to the development of cancer.
 
An almost inconceivable research trio came into being when theoretical physicist Prof. Samuel Safran of the Materials and Interfaces Department joined the team. For those not familiar with the scientific spectrum, biology and theoretical physics are considered to be at opposite ends. Very seldom does one find a biologist working alongside a theoretical physicist. "Biologists and physicists speak different languages. Our first objective was to find a common one. This study shows that we succeeded," says Safran.
 
Safran's research group constructed a theory that successfully predicts how the shape of the membrane will vary with cytoskeleton rigidity, and hence with the concentration of the drug. Says Safran: "The ability to predict is a major step toward the ability to control."
 
In addition, Moses is currently involved in another study combining physics and biology; he is investigating how neurons branch out and connect to one another. Neurons, which form a network through which they send electrical currents to one another, may be the key to constructing biological computer chips to replace or improve silicon chips in the future. Here the physicist must use his understanding of organization, connectivity and cooperation in many body systems to try to decipher the cell's innate ability to construct electrical circuits.
 
"This isn't the physics of the Big Bang," says Moses. "It's physics on a human scale, the physics of people."
Life Sciences
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Cell Peer Pressure

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An outdoor discussion. From left to right: Prof. Lia Addadi, Ph.D. student Ella Zimmerman and Prof. Benjamin Geiger

"Tell me who a cell's neighbors are, and I'll tell you how it looks and behaves," says Prof. Benjamin Geiger, head of the Molecular Cell Biology Department. Together with biologists, chemists and physicists at the Weizmann Institute, he is observing the adhesion of cells in order to find clues to how they transfer information -- or don't.

 
Cells communicate -- at times by touch, at times by sending messages. And as in so many other situations in life, when communication is severed, crisis is born. In the body, one such crisis is cancer. When scientists interfere with a cell's physical contact with its neighbor, i.e., interfere with "touch" communication, the cell's appearance and behavior change. "Cells are like members in a society -- each has its role, communicated to it by other cells and dependent on them," says Geiger.
 
Through observation of cell adhesion, the uncontrolled proliferation of cells characteristic of cancer may be understood. Under normal conditions, when cells reach a certain density they stop multiplying. In recent studies, Geiger showed that the physical contact between cells generates signals instructing cells to stop multiplying. "We are now trying to find the molecular mechanism of this communication system," says Geiger. "The failure of this proliferation control mechanism might be a cause of malignant tumor formation."
 
Another question critical to cancer research that involves adhesion: How does a tumor dissociate itself from surrounding cells and move elsewhere in the most dangerous of stages in cancer, metastasis (the condition in which the malignancy spreads to other organs in the body)?
 
"Since so little is known about cell-to-cell adhesion, we felt that we must first analyze the cell's adhesiveness to a known and defined surface. And what is better defined and understood than a crystal?"
 
This is where Prof. Lia Addadi, head of the Structural Biology Department, came in. Joining her expertise in crystal behavior and Geiger's knowledge of cell behavior, they observed the way in which cells bind to different crystal surfaces. They found not only that cell adhesion was dependent on the chemical structure of the crystal, but also that cells were incredibly picky and specific as to what they would bind to. For instance, cells would stick to a crystal of a certain chemical composition but would not stick to the surface of its mirror image.
 
Cells under the microscope
 
To study the mechanical properties of cell adhesion, Dr. Michael Elbaum came on board. A physicist in the Materials and Interfaces Department, Elbaum is analyzing questions that require a thorough understanding of mechanics: How much force is needed to tear a cell away from a surface? How does this change from surface to surface? In short, how much of a fight can a cell put up? The answers to these questions are important for the understanding of metastasis.
 
Elbaum is testing this by conducting a "contest" between cells and powerful focused laser beams that can hold them in place. The studies are being carried out in collaboration with Dr. Alexander Bershadsky of the Molecular Cell Biology Department, who is an expert in the force-generating machinery of cells just below the cell membrane, a system known as the cytoskeleton.
 
Yet another angle to the understanding of cellular adhesion was provided by Prof. Zvi Kam, also of the Molecular Cell Biology Department, who masterminded a high-resolution digital microscope for the study. The novel microscope system, made possible by Kam's knowledge of optics and advanced image processing, has proven pivotal in detecting and quantifying molecules active in cell adhesion. The system is used to observe how these molecules spread throughout cells, relaying messages from their surroundings.
 
With biologists, chemists and physicists each contributing their pieces to the puzzle, there is hope that more comprehensive answers will be found to the many unknowns of cell adhesion. "The boundaries between the traditional research disciplines have become blurred," says Geiger. "Biology, chemistry and physics are each bringing something of their own to the table, contributing in concert to the unraveling of the mysteries of cell adhesion."
 
Life Sciences
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Life's Twists and Turns

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Prof. Joel Stavans. "Technology has brought biology closer to physicists"
 

 

 

 

 

 

 

 

 

The Tower of Babel. That's what you often find when you put biologists and physicists together. Biologists, possessing a rich vocabulary of molecular nomenclature and conditions, are regarded by physicists with bewilderment. And the physicist's minimalistic terminology, which strives to describe the universe and everything in it in terms of a few forces and particles, seems to biologists incomprehensibly sparse.
 
But communicative sparks between the two groups can, at times, be observed. Take Prof. Joel Stavans, a physicist, and Dr. Opher Gileadi, a biologist. They are working side by side to decipher a language that is equally enigmatic to both: the DNA molecule's secret code of life.
 
Unlike biologists who have focused mainly on identifying the genes lodged in the DNA, Stavans of the Physics of Complex Systems Department and Gileadi of the Molecular Genetics Department peer at DNA from a different angle. What happens when you stretch a DNA molecule, when does the DNA fold, and what effect does this have on gene expression?
Biologists have found that a molecule in our body that is a motor, scanner and printer all in one, plays an important role in gene expression. Called RNA polymerase, this multitalented molecule seats itself on one end of a gene. It then travels along the gene, producing a "print-out" of the genetic sequence. This printout is in fact a molecule called RNA. It is carried from the DNA to a "protein factory" which, reading the printout, manufactures the proper protein.
 
But what is it that determines on which gene the machine will seat itself, i.e., what determines which gene will be expressed at a particular time? DNA contains certain sections that are "instruction manuals": they specify when and where RNA polymerase should start its work. These sections (called regulatory sequences) are placed in between the genes, which themselves constitute only a small portion of the DNA.
 
At times, an instruction manual can be positioned at a great distance from the gene that it wants to activate. To cause the gene's activation, it must get closer to the gene. Biologists have found that this often occurs by the looping of intervening DNA (much like the "loop" that is formed when bringing our forehead to our otherwise faraway knees). Naturally, the forces and factors that can influence DNA looping are of critical importance for the function of genes.
 
In the loop
"To study looping, we are looking for ways to induce the DNA to loop," says Stavans. One known method is to introduce a special protein into the DNA's environment. It is a DNA-binding protein, meaning that it binds to the DNA at certain sites. Stavans and Gileadi inserted into the DNA two sites for which the protein has an affinity. The protein, spotting two sites that it "liked," simultaneously attached itself to both sites and brought them together in a loop.
 
Though scientists cannot see the looping itself since it is much too small, they have developed a method providing them with evidence of looping. One end of the DNA strand is attached to a surface and the other to a bead large enough to be detected using a microscope. When a loop is formed, a decrease in the distance between the bead and the surface can be observed. Stavans and Gileadi are using this method to understand the physical rules that govern looping and the factors that affect it in living cells.
 
Says Stavans: "Technology has brought biology closer to physicists. Now it is possible to analyze one strand of DNA, a concept attractive to a physicist, who usually strives to reduce complex systems to their simple components."
 
Life Sciences
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To the Marrow

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Cells with the CXCR4 receptor reach the bone marrow
 

 

 

 

 

 

 

 

 

Dr. Tsvee Lapidot is in a race to the finish. This is not a race to win a trophy, but to find a means of saving lives otherwise lost when bone marrow transplants just don't take.
 
"We discovered that human stem cells are something like sailboats," Lapidot of the Immunology Department says of his work. "A sailboat will pick up the wind only if its sail is hoisted to a mast. Similarly, stem cells will migrate to the bone marrow only if they display on their surface a specific receptor that allows them to pick up the signals from marrow cells."
 
In bone marrow transplantation, a patient receives a transfusion of stem cells; ideally these migrate to the patient's bone marrow and start producing new, healthy blood. But many transplants fail. Why? Usually, too few stem cells make their way from the blood circulation into the recipient's bone marrow.
 
Lapidot's research team has revealed key elements of the mechanism responsible for migration of stem cells from circulating blood to the bone marrow. Furthermore, the scientists managed to dramatically increase the proportion of stem cells capable of migrating to the marrow.
 
"In the future, this approach might improve the success rate of human bone marrow transplantation," Lapidot says. He conducted this research with Drs. Amnon Peled, Isabelle Petit, Orit Kollet, Ofer Lider and Ronen Alon, together with Prof. Dov Zipori of the Molecular Cell Biology Department.
 
Bone marrow transplantation is a last-resort treatment that saves the lives of many patients with leukemia, other malignancies, and various blood disorders. In a transplantation, the patient's malignant or defective marrow is destroyed, and healthy stem cells are transfused intravenously into the blood circulation, in the hope that they will find their way to the patient's bones and create normal marrow. This marrow tissue daily produces hundreds of billions of red and white blood cells, the latter being those that protect the body from infections as part of the immune response. The Weizmann Institute scientists found that only human stem cells equipped with a certain type of receptor, called CXCR4, migrated from the circulation to the bone marrow of experimental mice. Aiding in this successful migration is a signaling molecule called SDF-1, which is released by bone marrow cells. To use another sailing metaphor, the signaling molecule is like a semaphore; it "attracts" human stem cells and guides them through the blood vessel walls into the marrow cavities.
 
The fact that only a small number of human stem cells display the CXCR4 receptor on their surface explains why so few stem cells are successfully transplanted. In the past, the low success rate was attributed to rapid stem cell differentiation. According to this theory, stem cells that entered the bone marrow cavity "disappeared" because, instead of proliferating, they quickly matured into the various types of blood cells. The new study, however, suggests that stem cells may also disappear because they lack the CXCR4 receptor and therefore fail to migrate to the recipient's marrow.
 
The researchers further demonstrated that the majority of human stem cells that do not express the CXCR4 receptor on their surface have the potential to do so. When, prior to transplantation, the stem cells were treated in a test tube with natural growth factors that stimulated them to express the CXCR4 receptor, they were converted into migrating cells capable of contributing to the daily production of blood. In the Weizmann study, use of this technique increased the number of successfully transplanted, functional human stem cells from 25 percent to more than 90 percent.
 
In the future, it may be possible to predict the success of a human bone marrow transplant by evaluating the highly variable proportion of the patient's stem cells that express the CXCR4 receptor. It may even be possible to preselect stem cells equipped with the CXCR4 receptor for transplantation purposes, or to pretreat the stem cells so that they all display the receptor.
 
Race to save lives
 
These measures should significantly increase the overall success rate of the procedure. Clinical testing of the method is currently under consideration.
 
This study could be conducted thanks to an experimental system developed by Lapidot and his colleagues, which overcomes a major difficulty in studying human stem cells: In a test tube, they quickly differentiate into mature blood cells and disappear. Lapidot's team developed a way of studying human stem cells by transplanting them into immunodeficient mice that lack the ability to reject foreign cells. This animal model thus serves as a powerful tool for research that may lead to improved therapies for human leukemias and other disorders.
 
The study was conducted in collaboration with researchers and physicians from the Hadassah University Hospital in Jerusalem, the Kaplan Medical Center in Rehovot, the Sourasky Medical Center in Tel Aviv, and the Jackson Laboratory in Bar Harbor, Maine.
 
Yeda Research and Development Co. Ltd., the Weizmann Institute's technology transfer arm, has filed a patent application for the findings of Dr. Lapidot's team.
 
Life Sciences
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Shaping the Future

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Frydman, Maoz, Sagiv and Cohen. Nano-building techniques

History repeats itself. However, can the history of "big things" be deliberately duplicated when developing "the small stuff"? Can massive be made into diminutive? Most importantly, can the process be revealed ­ and then restructured? And what does all of this have to do with cavemen?

Using the history of man-made architecture as an example, is it replicable when designing, manufacturing, and building electronic apparatus ­ when its size is only one-millionth of a millimeter?

Sounding the philosopher-architect in addition to the materials scientist, Prof. Jacob Sagiv of the Materials and Interfaces Department at the Institute is asking these questions, and he believes this is exactly the direction tomorrow's technology will take.

"Our ancestors," says Prof. Sagiv, "lived in the caves that nature provided. Later, they learned how to carve out the rock and to extend their caves. In this way, for example, ancient water cisterns were crafted. Thus, the city of Petra was carved out of the red rock in the southern part of the Kingdom of Jordan.

"Early man showed that with rock carving, one can produce some very impressive achievements. But at a certain stage this technology reaches the limit of its possibilities; those with the determination to progress must abandon it and find a more advanced replacement. This is exactly what the ancients did. Instead of continuing to carve out living accommodation from the existing natural rock, they began to chisel away at smaller stones, so that they could be used as building blocks to fabricate various structures with them: water cisterns, walls, and housing.

"Using the technique of building blocks, it was possible to reach a level of sophistication and complexity that surpasses previous, ancient methods. It cannot be compared with the products that were made using the technique of carving out natural rock. For example, today's building methods, to which various strengthening techniques were added, allow for the construction of the most complicated skyscrapers built by man. And he's still testing the limits.

"A similar development is also likely to take place in the field of constructing small electronic devices. Presently, integrated electronic circuits are being manufactured using methods based on 'digging,' by etching the crystals of semiconductors. The trend toward miniaturization of integrated circuits, to whatever extent possible, demands chemical 'carving' to a very delicate degree. But what level of delicacy can be reached? What are the boundaries of complexity of the structures that we can create in this way?

"As it's clear that we're approaching these limits, if we're going to continue to advance, we have to imitate the ancient architects. We've got to abandon the technique of carving out existing materials and start building structures and apparatus from the tiniest of building blocks available: molecules and atoms."

Prof. Sagiv, Dr. Rivka Maoz and research student Eli Frydman of the Institute's Materials and Interfaces Department, together with Dr. Sidney Cohen of the Institute's Chemical Services Unit, have recently taken some first steps in this direction; they've succeeded in building planned, simple three-dimensional structures out of molecules.

In the first stage, the researchers manufactured a base layer, one molecule thick, which was attached in a well-defined manner to the outer surface of a selected solid material, in this case, silicon. To do this, they used molecules that on one side are hydrophilic (i.e., water "loving") and on the other side, hydrophobic (i.e., water "hating"). When a plate of glass or a silicon chip is immersed in a solution containing such molecules, their hydrophilic sides attach themselves to the plate (as its properties are similar to those of water), while the hydrophobic sides face outwards.

Then they were ready for the building stage. This is how it works.

To mark the foundations of the molecular building, the researchers used an atomic force microscope. This is a lensless instrument that works by blindly groping about the face of the surface of the material using a needle with a fine tip which "feels out" the atoms and the molecules protruding from the top of the surface. The needle sends "sensations" to the computerized system which translates the "feelings" into pictures on a computer screen.

The distance between the sensing tip and the material's surface must be less than one nanometer (one-millionth of a millimeter). Following an idea suggested by Dr. Maoz, the Weizmann Institute team discovered that when a small electric current flows down the fine sensing tip, it can induce a localized chemical reaction which changes the properties of the molecules located directly beneath it, on the surface of the material being treated. In this way, the researchers were able to change the properties of the surface molecules in a specified area. Only "the chosen" will be adapted for additional connections to other selected molecules.

Using the needle of the atomic force microscope, the scientists could deliberately change the chemical properties of the hydrophobic, outwards-facing side of the molecules attached to the silicon chip, so that at any point where the tip "draws" lines of such chemical changes, new molecules can attach themselves to those first attached to the surface. In this way the "walls" of the molecular building are constructed.

In one experiment, for example, the members of the research team made a two-story molecular building in the shape of a tiny Star of David whose sides had a width of one-thousandth the width of a human hair.

These first steps in the architecture of molecular buildings are likely to bring about the development of tiny devices and other products which cannot be constructed using existing miniaturization technologies. The devices will be designed for high efficiency and, by their nature, will offer maximum space saving.

New and unconventional properties are likely to be derived both from their minuscule dimensions andfrom the purpose-designed spatial organization of their molecular components.

Prof. Sagiv and Dr. Maoz dream of giving new meaning to "Small is beautiful." While most of us are still struggling with "Think big," it's apparent that creative living solutions are literally right under our noses, in miniature.

From big to small

 
Chemistry
English

Of Magnets, Molecules, and Memory

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Reducing switch size. Prof. Reshef Tenne

Toast 'em, roast 'em, shape 'em, salt 'em: Chip consumption has reached an all-time high. The consumer can't get enough of them, as the market clamors for the bigger, better and more perfect chip. There's another chip to add to the pile: computer chips. And make that with an extra dose of memory, please.

It all has to do with the law of supply and demand. The constant, urgent need for increased computer memory best exemplifies this theory.

While most computer users may not be aware of it, scientists and entrepreneurs worldwide are working nonstop to develop ways of creating more efficient and smaller-sized computer memory, as the demand for more minute and efficient memory continues to increase. But computer chip memory isn't just mixed in a test kitchen before hitting the shelves. This "recipe" calls for finetuning ­ of molecules and molecular structure. Computer memory is built from a large number of "switches" capable of being in one of two positions that can be called "on" or "off."

The switches in most computer memories are built of blocks of magnetic material, where a change in its magnetic polarity determines whether they change from on or off (or vice versa, as the instruments' developers determine).

In order to increase, as much as possible, the amounts of data that can be stored in any given physical space, scientists are being asked to constantly reduce the size of each switch. To what extent is this possible? Until every switch is based on only one molecule of material.

In various places around the world, and notably, at the Weizmann Institute of Science, different types of molecular switches have already been created. That's the good news. The bad news: The experiments for applying them to the construction of multiswitch computer memory have run into new obstacles. The ideal magnetic switch must be characterized by the low power of its magnetism (which allowsits magnetic polarity to be changed easily), and its stability (which allows the data to be stored reliably over long periods of time).

In other words, scientists trying to develop the molecular magnetic switches are searching for a material that is well-defined chemically, i.e., a pure substance, which contains only one type of molecule with no impurities, organized into a defined multimolecular spatial structure characterized by defined magnetic properties. At the same time it must also be resistant, as much as possible, to environmental effects: electrical fields, temperature changes, etc.

Unfortunately, demanding that all these properties exist together involves a catch. When single molecules comprising molecular switches are located very close to one another, any change in the magnetic polarity of one (for example, as a result of a temperature change), is liable to bring about a change in the magnetic polarity of its neighboring molecular switch. This effectively damages the ability of the medium to be used as a computer memory store or for it to reliably store data over the long term.

One proposal to solve this situation was recently made by Prof. Reshef Tenne of the Materials and Interfaces Department of the Weizmann Institute of Science. With colleagues Dr. Enrique Grunbaum of Weizmann and Drs. Jeremy Sloan and John Hutchinson of the University of Oxford, Prof. Tenne and his research student, Yaron Rosenfeld Hacohen, succeeded in creating a single molecular layer in a spherical shape, like a soccer ball, made from nickel-chloride molecules. The molecules are expected to have defined magnetic properties on one hand, and relative resistance to changing environmental conditions on the other. In effect, these are molecules capable of serving as magnetic memory switches with a high degree of reliability. Their findings are now being published in the prestigious international journal Nature.

Prof. Tenne and Rosenfeld Hacohen have also succeeded in creating tiny molecular "pipes" from nickel-chloride molecules. Tenne was the first to show that it's possible to build the molecular nanotubes from inorganic materials. Observation was done on a very small number of objects of this kind. In order to characterize and measure their properties, millions of such structures must first be synthesized. While research is in its earliest stages, it's hoped the nanotubes might one day serve a relatively large number of industrial applications, including their use as tools for "writing" magnetic data onto computer disks, and also for "reading" the data stored on such disks. The unique properties of nickel-chloride are likely to make it possible to read and write magnetic data, both optical and electrical, as one.
 
Another possible application of the new molecular tubes is to control the manufacture of computer chips. Additional uses? That's part of the thrill of the scientific process. It's probable that the greatest and most important employment of the first inorganic molecular tubes is yet to come.
 
Chemistry
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Size Counts...

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Prof. Israel Rubenstein and Dr. Gary Hodes. Smaller and higher

 
 
When it comes to size, Dr. Gary Hodes and Prof. Israel Rubinstein of the Materials and Interfaces Department are getting everything under control.

Their research is focusing on controlling the property and size of quantum particles (less than one-millionth of a millimeter) of semiconductors. Semiconductors are the basis of the transistor, which is the fundamental unit in radio, TV, computers, communications and other equipment. Their studies are an important step toward developing a single electron transistor, much smaller than present transistors.

As a result of their research, it emerges that when individual quantum particles are electro-deposited on a metal surface, the surface can act as a kind of template which determines both the direction and size of the particles.

Size is of the essence when it comes to quantum-sized semiconductors. It determines the amount of energy separating the conduction band and the valence band which electrons may occupy, known as the bandgap. Hodes and Rubinstein, in collaboration with Dr. Sidney Cohen of the Chemical Services Unit, and graduate student Boaz Alperson, developed a method to measure the dependence of the bandgap on the size of the quantum particle. The smaller a quantum particle, the wider its bandgap. This property may have great importance for the development of future electroopticaldevices.

How did they do it? Hodes' and Rubinstein's work involves the use of an atomic force microscope; they improved its measuring capability by covering its tip with an electricity-conducting metal.

Using the enhanced atomic microscope, they've succeeded in measuring the width of the bandgap in sing le quantum particles of the semiconductors they deposited. In these measurements, the first of their kind to be carried out at room temperature, the researchers also succeeded in monitoring the transfer of individual electrons into the semiconducting quantum particles.


...and Height Counts, Too


Prof. Israel Rubinstein of the Materials and Interfaces Department, and Prof. Abraham Shanzer of the Organic Chemistry Department, have developed a new technique for building ordered molecular structures. The structures are made from layers of organic molecules arranged in an orderly manner on the top of metal surfaces, and what's holding them together is a metal ion "cement."

The scientists can choose what kind of "building blocks" to use according to their expected chemical reactions. They can mix two or more types of building blocks, which respond differently to chemical reactants.

In this collaborative effort, Rubinstein and Shanzer are also working with Dr. Hagai Cohen of the Chemical Services Unit, and graduate students Anat Hatzor and Tamar Moav. When doing their "construction work," the scientists have already encoded the shape that will emerge after a specific chemical reaction. Therefore, by putting the whole building through a chosen chemical reaction, they're able to break up certain connections in a controlled way.

Using this technique, it's possible to build a complex molecular-scale building whose various wings reach different heights and different shapes, based on the architectural information which has been encoded in the building during its construction process.
 
Chemistry
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In-Between

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Save one penny. Save a second, and a third, until you've accrued enough to buy a 1,000-acre property. This is one metaphor for picturing the way molecule-upon-molecule, when combined, will a crystal of solid material make.

In reality, it would take a mighty long time to amass enough pennies for a parcel of land. Similarly, joining molecules together in this incremental fashion could take a lifetime of work and wait.

Profs. Meir Lahav and Leslie Leiserowitz, research student Shouwu Guo in collaboration with Dr. Ronit Popovitch-Biro, Dr. Gary Hodes and Dr. Hagai Cohen of the Materials and Interfaces Department, are literally looking into the matter. As molecular "behaviorists," they're exploring the ways in which different molecules can be collected, and how they behave.

A crystal of solid material is characterized by its latticework structure; the molecules or atoms which compose the crystal are organized in a kind of a set frame which repeats itself, with fixed distances between them. From this description, it would seem that adding molecules together isn't sufficient to create a solid crystal.

To break it down even further, let's go back a step. What exactly is a group of molecules? It's neither a material in a macro-molecular state, nor is it a crystal of solid matter. It's in a kind of interim phase between two types of arrangements, between two physical worlds.

Scientists have a term for this in-between molecular material state: a quantum particle. This is a collection, or quantity, of a few molecules that still hasn't arrived at a solid material stage. That's where the Weizmann researchers are looking for answers.

Recently, they succeeded in arranging several quantum particles of a semiconductor on a substrate of organic material. Here, the quantum "points" were arranged in a kind of matrix reminiscent of the organized structure of a crystal lattice. Interestingly, such a crystal is characterized by different optical and physical properties from those of a crystal composed of atoms or molecules.

Due to their properties, the crystals may one day find a variety of market applications, for example, as electrooptical apparatus.

Thanks to the Weizmann Institute scientists, there's no more need to collect pennies nor to break open the molecular piggybank. As part of their "savings" plan, they're now collecting points.
 
Chemistry
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Memories from Africa

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Past weather patterns

 

If the earth of Africa could speak, specifically, sediments over 2,000 years old, what could they tell us about the state of our lives in this era? Weizmann Institute scientists scaled the snow-capped mountains and valleys of Kenya to listen to the earth "remember" its past and more importantly, to impart its wisdom to our present and future.

Prof. Aldo Shemesh, head of the Environmental Sciences and Energy Research Department, together with Prof. W. Karlan from Stockholm University, Sweden, literally hit the ground of Africa trekking, in search of answers to the past trends of global warming.

But what does the purity of an ancient African landscape have to do with today's car exhaust and industrial fumes being spewed into the atmosphere?

Just as global warming suddenly crept up on us in the late twentieth century, so too were the scientists trying to identify past periods of rapid, sudden warming in our planet's history. They've been studying the historic climatic changes which took place in equatorial regions, of great importance in our understanding of the world's current climate transformation.

They travelled thousands of miles in distance to Mount Kenya, thousands of feet above sea level (14,268 feet/4,350 meters) and thousands of years back in time to look for abrupt climate change in the past ­ without any relationship to contemporary human activity.

After a long and tiring climb by foot, the scientists, accompanied by local porters, reached the upper valleys of Mount Kenya. In breathtaking surroundings replete with dramatic peaks and valleys, there are lakes in whose depths are found siliceous algae. Using specialized equipment brought from Sweden, they drilled and removed sections of the sediments from the bottom of several of the lakes.

There were two major thrusts of their investigation: dating the sediments, and attempting to learn about the climate prevalent when the algae were alive. Back from the field, Shemesh, joined by research student Miri Rietti-Shati, evaluated the age of the sediments by accelerator mass spectroscopy according to the measurement of the quantity of the radioactive carbon 14 within them. These measurements indicated that the sections brought back from the Mount Kenya lakes contain sedimentation dating from between 2,250 BCE and 750 CE.

That would place its age during the era of the establishment of the Greek Bronze-age Minoan, as well as Mexican Olmec civilizations and the Chinese Chou dynasty.

The next stage of their research was based on the quantitative proportions between the isotopes of oxygen found in the siliceous algae's skeletons, which would make it possible to determine what climate was then in existence.

An isotope is a particular version of an atom of an element. Isotopes of the same element are almost identical to each other from the aspect of their chemical properties. They are different from each other only by their weight and other physical characteristics. One example: The most common isotope of oxygen is oxygen 16, but in nature the (heavier) oxygen 18 isotope also exists.

The quantitative relationship between the oxygen isotopes found in the siliceous algae skeletons depends on climatic conditions. Significantly, when the climate cools, the quantity of oxygen 18 isotope increases relative to the quantity of oxygen 16 isotope in the algae skeletons.

Therefore, when the quantitative relationship between these two isotopes is tested in a sample of the sediment composed of the siliceous algae skeletons, it's possible to infer what the climate was like at the time the sediments were formed.

This exploration, carried out using a unique technique developed by Prof. Shemesh, showed that in Central Africa between 350 BCE and 450 CE, there occurred a swift and significant climatic warming. Prof. Shemesh: "This finding offers evidence that sudden climatic warming has happened naturally, without any connection to human activity. The documenting of climatic changes which have occurred in the past in various areas on Earth is likely to help in more accurately forecasting the outcome of human activity since the beginning of the Industrial Revolution."
Environment
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