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Science Feature Articles</p>

Centers of Excellence: Gene Targeting

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The Israel Science Foundation has recently initiated the establishment of Centers of Excellence at the country's leading academic institutions. The goal of this program -- to provide recognition and support for the work of outstanding groups of local scientists engaged in research at the highest international level. Ten Centers have been created to date, six of them headed by Weizmann Institute professors. Interface describes the activities of three Weizmann-led Centers of Excellence.

Prof. Peter Lonai. Major implications for medical research

How does a complex, three dimensional embryo develop from a single cell without major mistakes occurring in the process? What causes tissues to grow uncontrollably in certain types of cancer? These are the kinds of questions tackled by the Center of Excellence for the study of genes headed by Prof. Peter Lonai

The Center takes advantage of the Weizmann Institute's expertise in the technique known as gene targeting, in which specific defects are introduced into genes in order to clarify their function. The method has been hailed as one of the most important advances in molecular genetics and is expected to have major implications for medical research.

Lonai, who played a leading role in introducing gene targeting to Israel, uses the technique to clarify embryonic development. The commonly held theory is that this process is entirely predetermined by a genetic code or DNA program. Lonai disagrees.

"A living organism does not take shape like a fighter plane, in which the instructions for every single component are programmed in advance. In living organisms, messages are constantly being sent back and forth between cells, with each cell helping to define what will happen to the others," says Lonai.

"We know a lot about embryonic development in flies and worms, but very little about how this process occurs in mammals. In fact, we don't usually give much thought to this crucial stage of life. It is only when we notice a mutation, like a little finger twice as long as it should be, that we start to appreciate how amazing it is that the body's countless components usually come out just right."

Gene targeting makes it possible to perform sophisticated studies in mammals that until now were possible only with much simpler organisms. "It will soon become the primary method for analyzing cloned genes," says Lonai.

Since breakdowns in intracellular signals controlling the growth of tissues are known to cause certain types of malignancies, this study also is expected markedly to advance cancer research.

The new Center of Excellence, which provides expertise in gene targeting to scientists throughout the country, includes four research groups -- three led by Weizmann Institute scientists and one by a Bar-Ilan University researcher. In addition to heading the new Center, Lonai, a member of the Immunology Department, is in charge of the three Institute teams. The other two are led by Profs. David Givol and Yosef Yarden of the Molecular Cell Biology Department.
 
 
Life Sciences
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Why Does your Face Look so Familiar?

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Even frowning, she' still Mona Lisa
 
A new theory developed by a Weizmann Institute mathematician may explain one of the most remarkable and mysterious capacities of the brain -- its ability to recognize familiar objects even when conditions for viewing, such as lighting, distance or position, change dramatically.

Prof. Shimon Ullman of the Department of Applied Mathematics and Computer Science has developed a computational model that describes how the brain may process visual information to make such recognition possible. According to him, the brain stores not only "snapshots" of objects but also knowledge, gained from experience, about the way objects change under various viewing conditions. For example, after seeing many smiling faces, it can generate a smiling version of any glum-looking face.
 
Using this knowledge, the brain generates numerous versions of an image newly presented to it. In parallel, it creates multiple versions of an image stored in its memory. These two sets of versions are compared and when a close match is found between two images -- bingo! -- recognition occurs. According to the model, the process takes only a fraction of a second because the brain concurrently generates several thousand varieties of each image.
 
Prof. Shimon Ullman. Object recognition
 
"Recognition is not a straightforward comparison, it's an active trial-and-error process involving multiple transformations that take place before a comparison with a stored image is performed," Ullman says.

Ullman's Ph.D. student Assaf Zeira has used this theory to teach a computer to recognize faces. His program enables the machine to recognize an endless number of views of a particular face based on several snapshots of this face stored in its memory. Ullman's model will be further tested in biological experiments, some of them to be conducted by Weizmann Institute neurobiologists.

Prof. Ullman is the incumbent of the Ruth and Samy Cohn Chair of Computer Science. Funding for this research was provided by the Israel Science Foundation.
 
Math & Computer Science
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International Protein Data Bank Enhanced by Computer Browser

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Access to the Protein Data Bank (PDB), a major international resource archiving the three-dimensional structures of thousands of proteins, nucleic acids and other biological macromolecules, has been greatly enhanced by a computer utility developed through a collaboration of Weizmann Institute and Brookhaven National Laboratory researchers. The new browser, described in a recent issue of Nature, facilitates database usage by making index listings and ad-hoc search protocols far more user-friendly.

Data on crystal structures -- important for understanding protein function, engineering novel proteins and designing new drugs -- have been accumulating exponentially in recent years, due to improvements in molecular biology techniques, X-ray detectors, high-power synchrotrons and nuclear magnetic resonance technology. The PDB was set up at the
Brookhaven National Laboratory in Upton, New York, in order to store such information and make it available to the world scientific community, traditionally via magnetic tape and more recently on compact disks. However, the volume of data had begun to present a problem for those searching the entire collection.

The new browser, developed by Prof. Joel Sussman of the Weizmann Institute and Brookhaven, Dr. Clifford Felder of the Weizmann Institute and Dr. David Stampf of Brookhaven, solves this problem with a utility that enables a complete text search of PDB entries on-line in a user-friendly environment. All components of this browser were written using public domain software, which is freely available to users.

Prof. Sussman, a member of the Institute's Department of Structural Biology, also works at the Brookhaven Laboratory, where he heads the Protein Data Bank. Dr. Felder is a technical assistant in the Institute's Departments of Structural Biology and Chemical Physics.
Math & Computer Science
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Tiniest Switches Promise Ultracompact Computer Memories

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A unique organic molecule that my pave the way toward the design of incredibly compact digital storage devices or computer memories has been developed by Weizmann Institute scientists.

The researchers -- a team or organic chemists including graduate student Lior Zelikovich, senior staff scientist Dr. Jacqueline Libman, and group leader Prof. Abraham Shanzer -- have synthesized novel, triple-stranded complexes of iron that my serve as the basis for switches the size of a small molecule.

Adapting these molecular-sized switches for use as ultracompact electronic devices -- whose digital circuitry would contain tens of million of "on"-"off" elements -- will require the solution of several inherent problems. There are no known methods for turning individual molecular switches "on" and "off" (the so-called "addressing" problem), or for detecting whether a particular molecular switch is "on" or "off" (the "reading" problem), or for "wiring" individual molecules to the external world. Improved switching complexes that operate much more rapidly will also be needed.

"There is no way to predict when molecular switches will become integrated into functional devices," says Shanzer. "But because of the importance of further miniaturization of electronic components, research into the ultimate level of miniaturization -- the use of molecular components -- is now attracting increasing scientific interest. When this technology comes of age, it could result in digital storage elements and memories millions of times more compact than now available, and in novel devices with capabilities far beyond anything possible today."

Building on their experience in synthesizing metal-binding organic compounds for medical, industrial and agricultural applications, the Shanzer-Libman team turned to the design of similar complexes with switch-like properties. In this work, they engineered an organic molecule with two sites, each of which binds iron in differently charged states. Using simple chemical techniques, the charge on the iron can be raised or lowered, causing it to jump between the two molecular sites. This jump causes the complex to change its color from yellow-brown to purple, a change that is easily seen in the test tube.

The Shanzer-Libman team is now working on other molecules that may have a potential to be "switched," as well as on molecular structures that may be applicable for use as conductors or diodes. They are also examining ways of turning their molecular switches "on" and "off" by electrochemical and photochemical means, approaches that are closer to real-life, solid-state conditions than reaction chemistry in a test tube.

This research, which was undertaken at the Institute's Department of Organic Chemistry, was supported by the Israel Science Foundation (which is administered by the Israel Academy of Sciences and Humanities) and by the Consortium of German Chemical Companies.

Prof. Shanzer is the incumbent of the Siegfried and Irma Ullmann Professorial Chair.
Chemistry
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Concentrated Solar Beam Creates a Better Superconductor

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Focused sunlight gets super hot
 
In 212 B.C.E., Archimedes is said to have used concentrated sunlight to torch the Roman fleet besieging Syracuse. Now Institute researchers have revived this ancient method to produce a high-temperature superconductor with potential industrial applications.

The team of scientists headed by Prof. Shimon Reich "cooked" ceramic material in a solar beam concentrated to 11,000 times the intensity of sunlight reaching the Earth. This clean and fast method, tested at the Institute's Rowland and Sylvia Schaefer Solar Research Complex, marks the first time a superconductor was produced using solar heating.

This ceramic superconductor may one day be used to build a variety of improved mechanical devices, such as frictionless ball bearings that never need oiling, efficient magnetic dampers of mechanical vibrations, and magnetic clutches with no direct contact between the clutch plates. In such equipment, parts that normally glide across or bang against each other would be separated by a cushion of air about 3 mm (one-eight of an inch) deep, and held in place by a magnetic field.
 

Prof. Shimon Reich. Melt it fast

These applications can be envisioned thanks to the unique properties of the superconductor, which carries a strong electric current and makes it possible to suspend magnets in midair.

According to Prof. Reich, fast melting and quenching is essential for making better superconductors, and this is precisely what the solar method provides. In contrast with conventional furnaces, the powerful sunbeam melts the material instantly helping to endow it with desired properties.

Taking part in this project were doctoral students Tatyana Godin and Dario Veretnik and lab assistants Rahamim Rubin and Geula Talmi. The research was supported by the Minerva Foundation, Munich, Germany.

Prof. Reich, a member of the Department of Materials and Interfaces, is the incumbent of the Robert W. Reneker Chair of Industrial Chemistry.
 
Chemistry
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New Method Predicts Groundwater Levels

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Drs. Brian Berkowiz and Daniel Ronen. Predicting underground levels
 
A new method for determining whether a decrease in the levels of lakes without outlets -- such as the Dead Sea -- is accompanied by a parallel drop in the groundwater level of nearby aquifers has been developed in a new Institute study. Such a drop would mean that less water is available for drinking and agriculture.

The model -- developed by Dr. Daniel Ronen, Dr. Brain Berkowitz and doctoral student Yosef Yechieli of the Institute's Department of Environmental Sciences and Energy Research -- is described in a recent issue of Water Resources Research, published by the American Geophysics Union. Although the research focused on the Dead Sea, it is applicable to similar closed-basin terminal lakes, such as the Great Salt Lake in Utah, the Salton Sea in California and Lake Magadi in Chad.

The water level of the Dead Sea, the terminal lake of the Jordan River system and the lowest lake in the world, has decreased at an average of 0.5 meters per year since 1960. Water from several nearby aquifers seeps through the soil into this extremely saline body of water, adding groundwater of varying chemical compositions to the lake.
 
A wadi near the Dead Sea. Underground flow
 
The response of groundwater level to changes in the Dead Sea level was found to be rapid -- in fact, a matter of days. This finding, along with data yielded by the study of the structural and hydraulic properties of the aquifer, will now facilitate the forecasting of future correlations between the Dead Sea and its neighboring aquifers.

Measurements of the groundwater were taken via observation wells in Wadi Tze'elim and in Turiebe, while those of the Dead Sea were obtained from records of the Dead Sea Works. The model takes into account a wide variety of factors, such as the distance between the wells and the lake, the slope of the bottom of the lake, and density differences between the salty lakewater and the groundwater.

This work was supported by a grant from the Israel Ministry of Energy and Infrastructure. Dr. Berkowitz holds the Barecha Foundation Career Development Chair. Yechieli, having completed his doctorate, is now employed by the Geological Survey of Israel.
 
Environment
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Light Shed on Radiation from Outer Space

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The origin of cosmic rays -- the radiation that provides intriguing insights into the nature of matter throughout the universe -- may have been clarified in a new Institute study, parts of which appeared in a recent issue of Astrophysical Journal Letters.

Profs. Mordehai Milgrom and Vladimir Usov of the Department of Condensed Matter Physics have found evidence that cosmic rays of particularly high energy originate from the same cosmological outbursts that give rise to gamma-ray bursts -- electromagnetic waves that are similar to X-rays, but with shorter wavelengths. If this new association between cosmic rays and gamma rays proves correct, it will greatly enhance our understanding of their source, and facilitate the effort to decipher the valuable clues they both evince about the physical conditions of our galaxy and beyond.

Milgrom and Usov analyzed the two highest-energy cosmic ray showers known, and traced the likely course of their journey to earth on a cosmic map in order to locate their probable source. They then went through the records of gamma-ray bursts from the year or two preceding the arrival of these showers to determine whether any of the bursts appeared to originate from the same location as the cosmic rays. In both cases, they found a strong correspondence between the regions where the cosmic rays and the gamma rays seem to have originated. This means that both types of rays were evidently produced by the same cataclysmic events.
 

Illustration of a cataclysmic event

Although the cosmic rays seem to begin their journey together with the gamma rays, they are detected a few months or even years later because they do not travel in a straight line. Being charged particles, they are affected by magnetic fields both within and between galaxies, which cause them to move in a snake-like fashion and delay their arrival on Earth.

"The two cases we examined do not in themselves establish the association, but they clearly suggest that these two intriguing phenomenan are related," Prof. Milgrom says. "It might be possible to corroborate our theory within the next few years, and if this happens, it will impose very important constraints on both systems and make our attempts to understand their nature far easier."
Prof. Usov joined the Weizmann Institute in 1990 from the Space Research Institute in Moscow.
 
Space & Physics
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Tumor Dependence on Blood Vessels Traced

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The dependence of tumor growth on the development of new blood vessels was, for the first time, traced in vivo through a noninvasive procedure developed at the Institute and described in a recent issue of Cancer Research.

A major concept in solid tumor physiology states that tumors can grow only to a size of approximately 1 mm in the absence of new blood vessels, due to limited nutrient and oxygen supply. While supporting evidence for this hypothesis has been accumulating, the new study -- carried out by doctoral student Rinat Abramovitch, technician Gila Meir and Dr. Michal Neeman of the Institute's Department of Hormone Research -- furnishes quantitative documentation of this phenomenon.

Making use of noninvasive magnetic resonance imaging (MRI), the Weizmann team found a consistent four-day lag in the growth of tumors implanted in immune-deficient mice. During this period, blood vessels near the tumor began to develop. Rapid tumor growth was observed only after the fourth day following implantation, which was also when the new blood vessels reached the tumor.

"The ability to observe the early stages of new blood-vessel development in vivo in a tumor with well-defined initial conditions will open new possibilities for the evaluation of the role of metabolic stress in this critical stage of tumor establishment," the scientists write.

This study also demonstrated that tumor-induced generation of vessels could be measured separately from vessel formation triggered by wound healing. The separate measurements were made possible by positioning the tumor 1 cm away from the site of incision and simultaneously monitoring both tumor expansion and the wound-healing process.

Nearly all solid tumors evolved through two phases -- avascular (without vessels) and vascular. Cells of avascular tumors usually do not invade or violate the integrity of their host. In contrast, vascularized tumors appear to compress, invade and destroy neighboring tissue. This critical point of tumor vascularization may thus become a favorable target for various therapies.

Dr. Neeman is the incumbent of the Dr. Phil Gold Career Development Chair of Cancer Research.
Life Sciences
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Tuberculosis Bacteria May Protect Against Autoimmune Disease

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Dr. Kerlero de Rosbo and Prof. Ben-Nun. Selective enhancement

Institute researchers have identified a bacteria-derived protein that protects animals from experimental autoimmune encephalitis (EAE), a disease closely resembling multiple sclerosis (MS) in humans.

This research provides a potential starting point for designing additional drugs for multiple sclerosis, a disease in which the destruction of myelin leads to muscle weakness and paralysis. Two medications for multiple sclerosis -- copolymer-1 and interferon-beta -- have already emerged from other Weizmann Institute laboratories.

This latest finding is an outgrowth of Institute studies into the unexpected effects of specific bacteria on experimental autoimmune diseases. Participating in this work, described in the Journal of Immunology, were Prof. Avraham Ben-Nun of the Department of Immunology, Australian visiting scientist Dr. Nicole Kerlero de Rosbo and graduate students Itzhak Mendel and Gregor Sappler.

It has long been know that when tuberculosis bacteria are injected into mice together with myelin basic protein -- a component of nerve tissue and a weak stimulator of an animal's immune system -- the bacteria cause the immune system to "overwork," and the mice develop full-blown nerve-damaging EAE. However, a 1992 study by Prof. Ben-Nun and departmental colleague Dr. Dan Lehman showed that under certain circumstances the very same bacteria produce the reverse effect and protect the mice from EAE. In the latest study, Ben-Nun and his team identified a specific bacterial protein that provides this protective activity.

In both EAE and multiple sclerosis, the body's immune system attacks scattered areas of the brain and spinal cord, causing inflammation and also stripping nerve fibers of their insulating myelin sheaths, thus impairing their ability to conduct impulses. The Institute team found that the newly-discovered bacterial protein can provide effective protection because it selectively enhances the production of immune-system T cells without stimulating the production of the T cells that attack myelin.

Prof. Ben-Nun holds the Eugene and Marcia Applebaum Chair
Life Sciences
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Weizmann Scientists put Israel in Forefront of Microelectronics

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Clean room in the Submicron Research Center

Thanks to the Weizmann Institute, Israel is now in the forefront of microelectronics research, even though such research did not even exist in this country five years ago. The change was brought about by the establishment of the Joseph H. and Belle R. Braun Center for Submicron Research, where scientists are exploring the physics of ultrasmall systems and providing the government and industry with know-how and technical support for the development of tomorrow's electronic devices.
 
Also thanks to the Braun Center -- headed by Prof. Mordehai Heiblum and located in the Hermann and Dan Mayer Building for Semiconductor Science -- Israel will be the venue of the 1998 International Conference on the Physics of Semiconductors.
 
Among the scientific breakthroughs achieved by Weizmann scientists at the Braun Center is the discovery -- made by Prof. Heiblum and colleagues -- that the mobility of electrons in semiconductors can be increased six-fold by manipulating the charges of impurities introduced into these materials. In another project, Dr. Udi Meirav and his team have achieved the long-standing goal of determining the distribution of electron flow under conditions known as the quantum Hall effect. In a third study, Prof. Israel Bar-Joseph and co-workers have clarified the behavior of electrons during metal-insulator transition, the phenomenon that underlies the operation of modern transistors.
 
These and other findings may provide the theoretical basis for the design of innovative ultra-tiny electronic equipment that will be faster than existing devices.

Since Braun Center scientists are conducting most of their experiments on gallium arsenide (GaAs), a superior alternative to the silicon used in advanced electronic equipment, they have gained great expertise in this material. As a result, they are engaged in collaborative projects with researchers from government and industry aimed at developing faster microwave transistors, improved optoelectronic detectors, and other devices that are based on GaAr.
 
Such collaborative projects help cover a substantial part of the running costs of the Braun Center, the only place in Israel that possesses molecular beam epitaxy and electron beam writing systems -- equipment required for growing GaAs crystals and miniaturizing them to submicron dimensions. In fact, the possibility of collaboration with the Center influenced the decision of Elta, a subsidiary of Israel Aircraft Industries, to launch a $15 million project for manufacturing GaAs devices.
Space & Physics
English
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